Access to Data
KARG aims to integrate multiple analysis strategies in drug addiction to compensate for the biases that affect each strategy. The data and knowledge linking genes and chromosome regions to addiction were extracted from reviewing more than 1,000 peer-reviewed publications from between 1976 and 2006. This list of publications included recent review papers on addiction selected from results of PUBMED query ‘(addiction OR “drug abuse") AND review' as well as research papers selected from PUBMED query ‘(addiction OR “drug abuse") AND (gene OR microarray OR proteomics OR QTL OR “population association” OR “genetic linkage”)'. The data spanned multiple technology platforms including classical hypothesis-testing of single genes, identification of significantly differentially expressed genes in microarray experiments, identification of significantly differentially expressed proteins in proteomics assays, identification of addiction-vulnerable chromosome regions in animal QTL studies, genetic linkage studies, population association studies, and OMIM annotations. From each publication we collected the genes, proteins, or chromosome regions linked to addiction, as well as metadata such as species, nature of the addictive substance, studied brain regions, technology platforms, and experimental parameters. In total, we collected 2,343 items of evidence linking 1,500 human genes to addiction. Among them 396 genes were supported by two or more items of evidence. The KARG interface supports browsing of the genes by chromosome or pathways, advanced text search by gene ID, organism, type of addictive substance, technology platform, protein domain, and/or PUBMED ID, and sequence search by BLAST similarity. All data, database schema, and MySQL commands are freely available for download at our download page: http://karg.cbi.pku.edu.cn/download.php